McCammon Group
NewsSeminarsPublicationsPeopleWikiContact Us
McCammon Group
We have recently changed our website. Looking for the previous site?
Computational Research in Molecular Chemistry
Login
Principal Investigator Current Members Alumni

Sabbatical Visitors

Stephen C. Harvey
1/81-6/81; Georgia Tech.
Eric Dickinson
7/84-9/84; University of Leeds, England.
Peter C. Jordan
9/86-6/87; Brandeis University.
Eric Jakobsson
12/86-6/87; University of Illinois at Urbana.
Scott Whittenburg
11/88-1/89; University of New Orleans.
Laura Nell
3/89-9/89; Baylor College of Medicine.
Bogdan Lesyng
7/90-10/90, 7/91-10/91, 7/92-10/92, 8/93-9/93; University of Warsaw, Poland.
Jay Rasaiah
1/92-12/92, 6/93-8/93; University of Maine.
Huan-Xiang Zhou
Florida State University, 6/96-8/96, 8/02, 3/09-5/09.
Mary Jo Ondrechen
4/97-9/97, 6/98-8/98, 9/99-12/99; Northeastern University.
José L. F. Abascal
6/97-9/97; Universidad Complutense de Madrid, Spain.
Haluk Resat
7/98-8/98; Koc University, Istinye, Istanbul, Turkey.
Michael Pear
1/00-12/01; Molecular Simulations, Inc..
Jesus Izaguirre
4/01-5/01; Notre Dame University.
Peter Langhoff
6/03-1/20, UCSD Visiting Scholar
Roberto A. Garza-López
8/03-9/03; Pomona College.
Valentina Tozzini
9/03-3/04; Scuola Normale Superiore, Pisa, Italy.
Chandrajit Bajaj
9/04-5/05; University of Texas at Austin.
Paul Seybold
1/05-4/05; Wright State University.
Volkhard Helms
5/07-8/07; Saarland University.
Jingfang Huang
3/08-9/08; University of North Carolina at Chapel Hill.
Sanjib Senapati
4/08-5/08; currently, Full Professor of Biotechnology, IIT Madras, Chennai, India.
Damian Mooney
6/09-8/09; University College Dublin.
Willy Wriggers
12/09-1/10, 12/10-1/11; 12/12-1/13; D.E. Shaw Research.
Irina Tikhonova
7/10-8/10; Queens University Belfast, UK.
Peter Tieleman
8/11-1/12; Professor, AHFMR Scientist. Department of Biological Sciences, University of Calgary.
Adam Van Wynsberghe
7/12-6/13; Hamilton College.
Kyou-Hoon Han
8/13-5/14; Korea Research Institute of Bioscience and Biotechnology.
Joachim Dzubiella
4/15 – 6/15; currently, Professor of Theoretical Physics, University of Freiburg.
Maria Kurnikova
1/18-8/18; Carnegie-Mellon University.
Joanna Trylska
9/1/18 – 8/31/19; University of Warsaw
Mazen Hamed
9/4/18 – 8/31/19, Birzeit University.

Staff Scientists

Robert Konecny
5/01-present; Director, Keck II Computational Facility.
Donald Hamelberg
1/06-8/08 currently Full Professor of Chemistry and Chair of Chemistry, Georgia State University, Atlanta, GA. - NSF CAREER Awardee, 2010.
Gary Huber
7/06 – 8/17 HHMI Bioinformatics Specialist I, 9/17 – present; UCSD Project Scientist IV
Barrett Abel
6/08-9/09; Scientific Programmer.
Phineus Markwick
8/08-7/14; HHMI Bioinformatics Specialist I.
Kennon Kwok
11/09-9/10; Programmer/Analyst IV.
Barry Grant
HHMI, 2/10-9/11, Bioinformatics Specialist I; currently, Teaching Professor, Biological Sciences, UCSD.
Brian Fox
9/11-7/14, subsequently, Senior Software Developer, Dell.
Cesar de Oliveira
1/12-5/13; currently, Principal Scientist, Schrodinger, Inc., San Diego
Denis Bucher
9/09-11/13; currently Head of Computational Chemistry at LeadXpro, Switzerland.
Andreas Goetz
3/13-9/13; Assistant Project Scientist. Currently, Associate Research Scientist, SDSC.
Yinglong Miao
9/15-6/17; currently, Associate Professor, Pharmacology & Computational Medicine at the University of North Carolina, Chapel Hill.
Giulia Palermo
2/18 – 6/18; currently, Associate Professor of Bioengineering and Chemistry, UC Riverside
Jianwei “John” Che
12/14-12/18, Visiting Scholar; currently, Research Scientist, Dana-Farber Cancer Institute.
Clarisse Ricci
11/20 – 9/21, Assistant Project Scientist. Currently, Senior Scientist, DE Shaw Research, NYC.

Postdoctoral Fellows

Scott Northrup
9/78-9/80; subsequently, Professor and Chair, Department of Chemistry, Tennessee Technological University – NIH Research Career Development Awardee, 1985.
Michael R. Pear
9/79-5/81; subsequently, Director of Bioinformatics, ISIS Pharmaceutical.
Boryeu Mao
7/80-7/83; subsequently, Principal Scientist, Cerep, Inc..
Max Berkowitz
8/80-8/83; subsequently, Professor, Department of Chemistry, University of North Carolina, Chapel Hill – W. Wiley Chair Professor, 1996.
Chyuan-Yih Lee
10/80-8/82; subsequently, Assistant Professor, Dept. of Physiology, National Yang-Ming University, Taiwan.
John W. Allen
9/81-8/83; subsequently, Research Scientist, Texas Instruments Corporation.
Lance J. Ransom-Wright
4/82-1/84; subsequently, Senior Director, Product Technology and Marketing, Support, Cengent Therapeutics, Inc.
Stuart A. Allison
9/82-8/84; subsequently, Professor, Dept. of Chemistry, Georgia State University – NSF Presidential Young Invesitgator Awardee, 1985.
Bhalachandra L. Tembe
9/83-8/84; subsequently, Professor, Department of Chemistry, Indian Institute of Technology, Bombay, India.
Indira Ghosh
9/83-8/86; subsequently, Professor and Dean of the School of Information Technology, Jawaharlal Nehru University, New Delhi, India.
Omar Karim
9/83-8/86; subsequently, Vice President, Research and Development, IDeaS, Inc.
Chung-Fun Wong
9/84-8/89; subsequently, Chung-Fun Wong, 9/84-8/89; currently, Professor, University of Missouri, St. Louis.
Terry Lybrand
12/84-8/87; subsequently, Professor, Department of Biochemistry, Vanderbilt University – NSF Presidential Young Investigator Awardee, 1987.
Russell J. Bacquet
1/85-8/87; subsequently, Director of Computational Chemistry, Agouron Pharmaceuticals, Inc.
Jeffry Madura
11/85-1/87; subsequently, Professor and Chair of Chemistry, Duquesne University.
Wan F. Lau
2/86-8/87; subsequently, Research Scientist, Squibb Institute for Medical Research.
Shankar Subramaniam
9/86-1/90; subsequently, Chair, Department of Bioengineering, University of California, San Diego.
Sundaram Sridharan
10/86-8/89; subsequently, Research Scientist, Pfizer.
Chong Zheng
1/87-8/90; subsequently, Professor, Department of Chemistry, Northern Illinois University – NSF Presidential Young Investigator Awardee, 1991.
Malcolm Davis
4/87-1/92; subsequently, Research Scientist, Bristol-Myers Squibb Research Institute.
Michael J. Mitchell
6/87-9/91; subsequently, Research Scientist, Becton-Dickinson Research Center.
Ralph Wheeler
10/87-1/90; subsequently,Professor and Chair, Department of Chemistry and Biochemistry, Northern Illinois University
Tjerk P. Straatsma
1/88-1/95; subsequently, Head of Scientific Computing, Oakridge National Laboratory.
John Tanner
8/88-8/93; subsequently, Professor, Department of Chemistry, University of Missouri.
Rebecca Wade
10/88-1/92; currently, Group Leader, Heidelberg Institute for Theoretical Studies and Professor, Heidelberg University.
Brock Luty
3/89-6/93; Ph.D. (University of Houston) 1993; subsequently, Director of Scientific Computing, Dart NeuroScience, San Diego, CA.
Jacqueline Sines
10/89-1/91; subsequently, Research Associate, Keck Center for Computational Biology, Baylor College of Medicine.
Nathalie Levasseur
1/90-2/91; subsequently, Research Scientist, L'Oreal, France.
James M. Briggs
5/90-10/98; subsequently, Professor Department of Biology & Biochemistry and Chemistry, NSM Associate Dean for Faculty Affairs, University of Houston.
Jian Shen
6/90-6/92; subsequently, Senior Research Investigator, Aventis, Inc.
Thanh N. Truong
8/90-8/92; subsequently, Professor of Chemistry, University of Utah – NSF Young Investigator Awardee, 1993.
Martin Zacharias
6/91-6/93; subsequently, Professor of Theoretical Biophysics, Physics Department, Technical University of Munich (TUM), Germany.
Yat-Ting Wong
8/91-8/93; subsequently, Asstistant Professor of Computational Science, University of Singapore.
Michael K. Gilson
8/91-7/94; subsequently, Chair of Computer-aided Drug Discovery, UCSD.
Kizhake Soman
7/92-12/94; subsequently, Research Asst. Prof., University of Texas Medical Branch at Galveston.
Eric Hawk
8/92-2/94; subsequently, Computational Consultant.
Michael Bass
1/93-7/94; subsequently, Scientific Director Computational Biology, Amgen, Inc.
Stan Wlodek
9/93-9/98; subsequently, Senior Research Scientist, OpenEye Scientific Software, Inc.
Tami Marrone
9/93-4/97; currently, Director, Computational Design, Treeline Biosciences
Shawn McDonald
10/93-1/96; subsequently, Research Scientist, Structural Bioinformatics, Inc.
Jan Antosiewicz
10/94-6/95; subsequently, Professor of Biophysics, Warsaw University, Poland.
Haluk Resat
10/94-8/96; subsequently, Program Director, Division of Biomedical Technology, Bioinformatics, and Computational Biology, NIH
Adrian Elcock
1/95-10/00; subsequently, Professor of Biochemistry, University of Iowa – NSF CAREER Awardee.
Aguinaldo Robinson
2/95-1/96; subsequently, Professor of Chemistry, Universidade Estadual Paulista, Brazil.
Gary Huber
9/95-8/99; subsequently, HHMI Bioinformatics Specialist, UCSD – NSF CAREER Awardee, 2001.
Maciej Baginski
9/95-7/96; subsequently, Associate Professor, Dept. of Pharmaceutical Technology and Biochemistry, Technical University of Gdansk, Poland.
Federico Fogolari
10/95-9/96; subsequently, Associate Professor of Applied Science, University of Udine.
Volkhard Helms
7/96-9/98; subsequently, Dean of Studies, University of Saarland, Saarbruecken, Germany – EMBO Young Investigator Awardee, 2001.
Timothy P. Westcott
9/96-10/97; subsequently, Systems Analyst, FileNet, Boston, MA.
Heather Carlson
1/96-6/00; currently, Professor of Chemistry and of Medicinal Chemistry, University of Michigan, Ann Arbor. Beckman Young Investigator Awardee, 2002, NSF CAREER Awardee, 2006.
Philippe Hünenberger
3/97-11/99; Currently, Professor of Theoretical Chemistry, ETH-Zurich.
Wolfgang Weber
8/97-4/99; subsequently, Science Policy Analyst, German Chemical Industry Assn., Frankfurt, Germany.
David Sept
10/97-3/01; subsequently, Professor, Biomedical Engineering Department, University of Michigan, Ann Arbor.
Willy Wriggers
11/97-10/99; subsequently, Associate Professor, School of Health Information Sciences, University of Texas Health Science Center at Houston – Sloan Research Fellow; subsequently, Research Scientist, D.E. Shaw Research; currently, Frank Batten Professor of Mechanical and Aerospace Engineering, Old Dominion University.
Tiziana Mordasini
9/98-12/99; subsequently, Research Scientist, IBM-Zurich.
Frank Brown
9/98-7/01; subsequently, Professor of Chemistry, University of California, Santa Barbara. Camille Dreyfus Teacher Scholar, Sloan Research Fellow – Presidential Early Career Award.
Marios Phillipopoulos
1/99-12/99; subsequently, Senior Database Administrator at Just Energy Group, Canada.
Dimitrios Morikis
6/99-5/01; subsequently, Professor, Department of Bioengineering, UC Riverside.
Christoph Sotriffer
6/99-8/00; subsequently, Professor of Pharmaceutical Chemistry at the University of Würzburg, Germany.
Haihong Ni
7/99-9/01; subsequently, Director of Computtional Chemistry at BioDuro, China. 
Richard Henchman
6/00-12/04; subsequently, Lecturer, University of Manchester, UK.
Jung-Hsin Lin
9/00-8/02; currently, Full Professor, School of Pharmacy, National Taiwan University and Full Research Fellow, Academia Sinica.
Alexei Podtelezhnikov
11/00-11/03; subsequently, Senior Research Scientist in Informatics at Merck & Co., West Point, PA.
Stephen Bond
11/00-8/03; subsequently, Senior Scientist, Applied Mathematics and Applications Group, Sandia National Laboratories.
Yingkai Zhang
12/00-8/03; currently, Professor of Chemistry, New York University and Courant Institute – NSF CAREER Awardee, 2004 – James D. Watson Young Investigator Award.
Jeremy Kua
3/01-8/02; currently, Professor of Chemistry, University of San Diego – Dreyfus New Faculty Awardee.
Jens-Erik Nielsen
5/01-9/03; currently, Senior Vice President Enzyme Research at Novonesis, Denmark.
Nathan Baker
6/01-6/02; subsequently, Associate Professor of Biochemistry and Molecular Biophysics, Washington University, St. Louis; subsequently, Chief Scientist, Pacific Northwest National Laboratory; currently, Senior Director, Partnerships for Chemistry and Materials – Microsoft
Burak Aksoylu
2/99-6/01; Ph.D. (Mathematics), co-advised with Mike Holst; Associate Professor of Mathematics, Texas A&M University-San Antonio.
Vanda Glezakou
8/01-7/02; subsequently, Staff Scientist, Pacific Northwest National Laboratory.
Hugh MacMillan
9/01-8/03; subsequently, Assistant Professor in Mathematics, Clemson University and 2010-11 American Mathematical Society Congressional Fellow.
Stewart Adcock
10/01-10/04. Currently, Technical Manager, CCDC - The Cambridge Crystallographic Data Centre
Wibke Sudholt
10/01-10/03; subsequently, Senior Research Associate in Chemistry, University of Zurich.
Jerry Greenberg
10/01-9/03; subsequently, Research Scientist, San Diego Supercomputer Center.
Jason Suen
9/02-8/04; subsequently, Senior Research Associate in Chemical Engineering, UCLA.
Cameron Mura
10/02-11/07; subsequently, Assistant Professor, Department of Chemistry, University of Virginia.
David Zhang
12/02-11/05; currently, Vice President, Head of Protein Engineering, MoleculeMind, Beijing.
Tongye Shen
12/02-9/07; currently, Associate Professor, Dept. of Biochemistry and Cellular and Molecular Biology, University of Tennessee, Knoxville.
Richard Law
1/03-3/05; 1/03-3/05; currently, Chief Business Officer, Exscientia, Abingdon, England.
Joanna Trylska
1/03-12/04; Professor, Warsaw University, Poland.
Ben-Zhuo Lu
2/03-9/08; currently, Professor, Institute of Computational Mathematics, Chinese Academy of Sciences, Beijing.
Donald Hamelberg
5/03-1/06 currently Full Professor of Chemistry and Chair of Chemistry, Georgia State University, Atlanta, GA. - NSF CAREER Awardee, 2010.
Sanjib Senapati
8/03-12/05; currently, Full Professor of Biotechnology, IIT Madras, Chennai, India.
Justin Gullingsrud
9/03-1/07; subsequently D.E. Shaw Research, New York.
Kay Hamacher
7/04-5/06; Liebig-Fellow; currently, Professor of Computational Biology & Simulation, Technische Universität Darmstadt.
Joachim Dzubiella
10/04-6/06; currently, Professor of Theoretical Physics, University of Freiburg,.
Tushar Jain
10/04-9/06; subsequently Senior Scientist, Adimab Inc.
Xiaolin Cheng
10/04- 2/08; currently, Professor, College of Pharmacy, The Ohio State University.
Chia-en Chang
1/05-12/07; Professor, Department of Chemistry, University of California, Riverside.
Ivaylo Ivanov
1/05-8/09; 1/05-8/09; currently, Professor, Georgia State University, Atlanta, GA.
Barry Grant
2/05-1/10; currently, Teaching Professor, Biological Sciences, UCSD.
Jennifer M. Bui
8/05-9/06; subsequently, NSF Postdoctoral Fellow, Cambridge University, UK.
Alemayehu Gorfe
9/05-12/08; currently, Professor of Integrative Biology and Pharmacology, UTHSC-Medical School, Houston, TX.
Cesar de Oliveira
9/05-12/12; currently, Principal Scientist, Schrödinger, Inc.
Rommie Amaro
11/05-6/09; subsequently, Professor, University of California, San Diego.
Yongcheng Zhou
8/06-7/08; currently, Professor of Mathematics, Colorado State University.
Riccardo Baron
9/06-7/11; subsequently Assistant Professor of Chemistry, University of Utah; currently, Director - Executive Advisor, AI Analytics, CVS Health.
Zeyun Yu
9/06-8/08; currently, Professor of Computer Science and Biomedical Engineering, University of Wisconsin, Milwaukee.
Sergio Wong
10/06-12/08; subsequently, Staff Scientist, Lawrence Livermore National Lab
Ilja Khavrutskii
2/07-6/09; subsequently, Research Scientist, Biotechnology High Performance Computing Software Applications Institute, Frederick, MD.
Adam Van Wynsberghe
6/07-7/09; subsequently, Associate Professor of Chemistry, Hamilton College, Clinton, NY.
Sarah Williams
6/07-9/10; currently, Associate Director, Computer Aided Drug Discovery at Ventus Therapeutics.
Yuhui Cheng
6/07-9/10.
Dong Xu
8/07-7/10; currently, Associate Professor of Chemistry, Idaho State University College of Pharmacy.
Anthony Ivetac
10/07-12/10; currently, Senior Principal Scientist at Mirati Therapeutics in San Diego.
Zhongming Wang
6/08-8/11; currently, Associate Professor of Mathematics at Florida International University.
Marco Gallo
5/08-1/09; subsequently, Assistant Professor, Department of Chemistry, University of Coahuila.
Yunrong Zhu
9/08 - 8/12; currently, Professor of Mathematics, Idaho State University.
Jeff Wereszczynski
10/08-7/13; currently, Associate Professor of Physics, IIT.
Yi Wang
1/09-8/12; subsequently, Associate Professor, The Chinese University of Hong Kong.
Piotr Setny
1/09-7/09; currently, Group Leader, Centre of New Technologies, University of Warsaw.
Elaine Thompson
1/09-1/13; subsequently, Food and Drug Administration.
Ari Stern
1/09-8/12; Currently, Associate Professor of Mathematics, Washington University in St. Louis.
Ryosuke Ishizuka
3/09-5/11; subsequently, Assistant Professor of Chemical Engineering, University of Osaka.
Denis Bucher
9/09-11/13; currently Head of Computational Chemistry at LeadXpro, Switzerland.
Sara (Nichols) Swift
10/09-8/13; currently, Research Scientist II, Vertex Pharmaceuticals.
Juan Ortiz Sánchez
3/10-3/12; subsequently, High School Science Teacher at Institute Vacarisses.
Jacob Durrant
7/10-6/11; Associate Professor of Biological Sciences, Univ. of Pittsburgh.
Peter Kekenes-Huskey
8/10-6/14; currently, Associate Professor, Loyola University at Chicago.
Steffen Lindert
4/11-8/15; currently, Associate Professor of Chemistry, The Ohio State University.
Andrew Gillette
9/11-8/13; currently, Associate Professor of Mathematics, University of Arizona.
Yanxiang Zhao
9/11-8/14; currently, Associate Professor of Mathematics, George Washington University.
Ferran Feixas-Geronès
1/12 - 1/14; currently, Ramon y Cajal Investigator and Group Leader, University of Girone, Spain.
Changsun Eun
2/12-5/14; subsequently, Research Scientist, MIT. Currently, Assistant Professor of Chemistry, Hankuk University of Foreign Studies, Korea.
Leonardo Boechi
4/12 - 3/14; subsequently, Asst. Professor of Mathematics, University of Buenos Aires.
William Sinko
7/12-11/13; currently, Director, Head of Computational Chemistry at Modulus Discovery.
Levi Pierce
7/12-10/12; subsequently; Director of Computation, Relay Therapeutics, Cambridge, MA
Yinglong Miao
9/15-6/17; currently, Associate Professor, Pharmacology & Computational Medicine at the University of North Carolina, Chapel Hill.
Yuanhua Cheng
1/13-12/13, visitor from U. Washington; currently, Senior Research Scientist, Merck & Co.
Shenggao Zhou
7/12-8/15; currently Professor of Mathematics, Shanghai Jiao Tong University (SJTU).
Kate (Rogers) Standish
7/13-4/14; currently, Senior Regional Medical Scientific Director, Oncology at Merck Research Labs.
Paul Gaspar
8/13 – 12/13; currently, Data Scientist, Facebook.
Dahlia Goldfeld
12/13-12/14. subsequently, Research Scientist, RAND Corp.
Patrick Blachly
8/14-4/15; subsequently, Director, Data at Ontra, lnc., San Francisco.
Yu-Ming “Mindy” Huang
11/15-7/19; currently, Assistant Professor of Physics, Wayne State University.
Clarisse Ricci
2/15-10/20. Currently, Senior Scientist, DE Shaw Research, NYC.
Nuo Wang
10/15-5/16; subsequently Postdoctoral Fellow, California Institute of Technology; now Scientist, Google
Ashay Patel
1/16-present.
Giulia Palermo
2/16 – 1/18; currently, Associate Professor of Bioengineering and Chemistry, UC Riverside
Olivia (Kim) Pierce
7/15-10/15; currently, Principal Scientist, CADD, at Bristol Myers Squibb.
John Moody
7/16-2/17; Currently, Director of Operations Research, Viasat Inc.
Daniel Mermelstein
6/18-9/18; currently, computational software engineer at Pfizer, La Jolla.
Wen Ma
8/18-1/24; currently, Assistant Professor of Physics, University of Vermont.
Surl-Hee Ahn
10/18-7/22; currently, Assistant Professor, Dept. of Chemical Engineering, UC Davis.
Haixin Wei
6/22 – present
Christian Seitz
11/22-2/23. Currently, postdoc, University of Chicago & Argonne National Lab.

Graduate Students

John D. Morgan
11/79-8/84; Ph.D., 1984; subsequently, Systems Analyst, State of Arkansas .
Charles Ulrich
1/82-12/87; M.S., 1988; subsequently, M.D., from U.T. Southwestern Medical School.
Terry Clark
1/83-12/96; M.S. (Chemistry), 1985; M.S (Computer Science), 1988; Ph.D. (Computer Science, University of Houston) 1996; subsequently, Assistant Professor of Computer Science, University of Kansas.
Girija Ganti
6/83-5/86; M.S., 1985; Ph.D., 1986; subsequently, Member of the Technical Staff, Lucent Bell Laboratories.
Gail Carlson
1/84-6/87; Ph.D.(Biochemistry, Texas A&M), 1987; subsequently, Research Director, American Veterinary Association.
Michael Mazor
1/85-8/89; Ph.D. (University of Houston) 1989; subsequently, Research Scientist, Dow Chemical.
Jean-Christophe Sauniere
12/85-12/86; M.S. (Computer Science) 1987; subsequently, National Service, France.
Jian Shen
1/87-6/90; Ph.D. (University of Houston) 1990; subsequently, Senior Research Investigator, Aventis, Inc.
Regis Pomes
1/88-6/93; Ph.D. (University of Houston) 1993; subsequently, Associate Professor, Department of Biochemistry, University of Toronto, Canada – Canada Research Chair Awardee, 2001.
William Cannon
12/88-5/94; Ph.D. ( University of Houston) 1994; subsequently, Research Scientist, Pacific Northwest National Laboratory.
Brock Luty
3/89-6/93; Ph.D. (University of Houston) 1993; subsequently, Director of Scientific Computing, Dart NeuroScience, San Diego, CA.
Samir El-Amrani
5/91-6/96; Ph.D. (University of Houston) 1996; subsequently, intellectual property law.
Michael J. Potter
10/93-6/98; Ph.D., 1998, subsequently, Chief Technical Officer, VeraChem LLC, Germantown, Maryland.
Paul Kirchhoff
10/93-6/98; Ph.D., 1988; subsequently, Research Scientist, Pfizer-Ann Arbor.
Jason Smart
1/95-6/98; Ph.D.(Physics), 1998; subsequently, Research Scientist, Incyte Genomics, Inc.
Sylvia Tara
5/96-10/98; Ph.D., 1998; subsequently, Director of Biosimilar Strategy in Amgen, Inc.
Roberto Lins
visitor 5/97-11/98; Ph.D., (Theoretical Biochemistry, Universidade Federal de Pernambuco, Brazil), 1999; subsequently, Professor of Chemistry, Universidade Federal de Pernambuco, Brazil. Currently, Research Scientist, Oswaldo Cruz Foundation, Brazil.
Paul I. W. de Bakker
visitor, 7/97-3/98; M. Pharm. (Pharmacological Chemistry, University of Utrecht) 1998; subsequently, Ph.D. student, Department of Biochemistry, Cambridge University; subsequently, Assistant Professor, Harvard Medical School Currently, Senior Director of Computational Genomics at Vertex Pharmaceuticals.
Nathan Baker
9/97-6/01; subsequently, Associate Professor of Biochemistry and Molecular Biophysics, Washington University, St. Louis; subsequently, Chief Scientist, Pacific Northwest National Laboratory – Sloan Research Fellow. Currently, Director of the Advanced Computing, Mathematics, and Data Division at Pacific Northwest National Laboratory.
Hagop Demirdjian
visitor 5/98-7/98; M.S. (Chemical Physics, ENS-Lyon) 1999; subsequently, Ph.D. student, Theoretical Chemistry, ENS-Paris.
Kaihsu Tai
9/98-12/02; Ph.D., 2002; Research Associate, University of Oxford, 2003 to 2009; with the European Chemicals Agency since 2010.
Tongye Shen
9/98-12/02; Ph.D. (Physics), 2002; currently, Associate Professor, Dept. of Biochemistry and Cellular and Molecular Biology, University of Tennessee, Knoxville
Larry Canino
10/98-12/01; M.S. (Physics), 2001; subsequently, scientific consulting.
Eric Scheeff
1/99-12/03; Ph.D. (Biomedical Sciences), 2003; subsequently, research scientist, The Salk Institute.
Burak Aksoylu
2/99-6/01; Ph.D. (Mathematics), co-advised with Mike Holst; Associate Professor of Mathematics, Texas A&M University-San Antonio.
Dennis Law
6/99-6/05; Ph.D. (Chemistry), 2005; subsequently, Research Scientist, Oak Ridge National Laboratory.
Ulf Börjesson
Visitor, 9/99-12/99; M.Sc. (Biotechnology, Uppsala Universite, Sweden) 2000; subsequently, Ph.D. student, Department of Physical Chemistry, ETH-Zürich.
Ernesto C. Andrianantoandro
1/00-9/01; M.Sc.; subsequently, Ph.D., Yale University; currently Scientific Editor, Cell Systems at Cell Press/Elsevier.
Julie Schames Pressman
4/00-4/05. NIH Pharmacology Training Grant Fellow; subsequently, Account Manager, BioProccess Division, MilliporeSigna.
Jennifer M. Bui
6/00-6/05; Ph.D. Chemistry (2005); subsequently, NSF Postdoctoral Fellow, Cambridge University, UK.
Alexander Perryman
7/00-6/05; Ph.D. (Biomedical Sciences); 2005; currently, Senior Scientist II, Repare Therapeutics, Montreal.
Laura Sagle
3/01-12/05; Ph.D. Chemistry (2005); subsequently, Assistant Professor of Chemistry, University of Cincinnati.
Aleksandra Walczak
visitor 6/01-9/01; subsequently, Research Scientist, Laboratoire Physique Théorique, Ecole Normale Supérieure, Paris.
Jessica Swanson
8/01-6/06 Ph.D; currently, Assistant Professor of Chemistry, University of Utah.
Thuy Dinh
1/02-12/06; Ph.D. (Chemistry), 2006; subsequently, independent consulting.
Kristin Toendel
visitor, 1/02-7/02 (Norwegian University of Science and Technology 2004); subsequently, Postdoctoral Fellow, Department of Cancer Research and Molecular Medicine at the Norwegian University of Science and Technology.
Barry Grant
visitor 9/02-12/02 (University of York 2004); currently, Teaching Professor, Biological Sciences, UCSD.
John Mongan
9/02-6/06; Ph.D. Bioinformatics, (2006); currently, Assistant Professor of Radiology, University of California at San Francisco.
David Cerutti
9/02-6/07 Ph.D. Chemistry (2007); currently, Scientific Engineer, High-Performance Computing at Psivant Therapeutics.
Yuhui Cheng
9/02-6/07; Ph.D. Physical Chemistry (2007); subsequently, Postdoctoral Fellow, UCSD.
Jie Liu
6/03-6/08.
Grace Yang
7/03-3/05; Ph.D. Chemistry (2005); subsequently, at the Burnham Institute.
David Minh
10/04-6/07; Ph.D. Physical Chemistry, (2007); currently, Robert E. Frey Endowed Chair in Chemistry at Illinois Institute of Technology.
Arneh Babakhani
3/05-6/09, Ph.D. Chemistry (2009); subsequently, M.D., U.S. Naval Medical School, currently, Medical Officer & Dept. Head, U.S. Navy (LCDR).
Kevin Litchfield
visitor 5/05-8/05, M.S. student, York University; subsequently; PPRS Pricing Expert, Norartis, London, UK
Jesper Sørensen
visitor 1/06-7/06, Ph.D. Chemistry, Aarhus University, Denmark., currently, Scientific Software Engineer, OpenEye Scientific Software, Inc.
Robert V. Swift
(Chemistry), 2/06-6/09. Ph.D. (2009); currently, Research Scientist, Relay Therapeutics, Inc.
Mikolai Fajer
(Chemistry), 1/07-9/11; currently, Research Scientist, Schrodinger Inc.
Morgan Lawrenz
1/07-6/11; Ph.D. (2011); currently, Associate Principal Scientist at Schrodinger, Inc., in San Diego.
Jacob Durrant
9/07-6/10; Ph.D. Biomedical Sciences (2010); Associate Professor of Biological Sciences, Univ. of Pittsburgh.
Paul Gasper
(Chemistry), 12/07-12/13; subsequently, Postdoctorl Fellow, University of Albany, RNA Institute.
Levi Pierce
(Chemistry), 7/08-7/12; subsequently; Director of Computation, Relay Therapeutics, Cambridge, MA
Tommy Sander
visitor 8/08-2/09. Ph.D., January 2011, University of Copenhagen, and will move to permanent position at Novo Nordisk in Copenhagen. 
Patricia Bauler
(Chemistry), 11/08-12/12; Ph.D. Chemistry (2012); currently, Faculty Support Assistant, UC Irvine.
Henrik Keranen
visitior, 4/09-8/09, Uppsala University, Upsula, Sweden; subsequently; Research Scientist, Lundbeck Pharmaceuticals.
William Sinko
6/09-7/12; Ph.D. Biomedical Sciences (2012); currently, Director, Head of Computational Chemistry at Modulus Discovery
Suryani Lukman
visitor 6/09-8/09; Ph.D. Chemistry (2011) Cambridge University, UK. Currently, Assistant Professor of Chemistry, Department of Applied Mathematics and Sciences, Khalifa University, Abu Dhabi.
Julia Romanowska
visitor 9/09-11/09; Ph.D. student, University of Warsaw. Subsequently, Postdoctoral Fellow, University of Bergen, Bergen, Norway.
Mehrnoosh Arrar
9/10-3/14, PhD Chemistry (2014); subsequently NSF Postdoctoral Fellow, University of Buenos Aires.
Lars Skjaerven
visitor 10/09-12/09; M.S. student, University of Bergen, Norway; currently, Senior Data Scientist, TV 2, Bergen.
Patrick Blachly
(Chemistry), 11/09-4/15; subsequently, Director, Data at InCloud Councel.
Kate (Rogers) Standish
(BMS), 11/09-6/13; Ph.D. Biomedical Sciences (2013); currently, Regional Medical Scientific Director Oncology, Merck Research Labs.
Aaron Friedman
(BMS), 1/09-12/13; Ph.D. Biomedical Sciences (2013); currently, Healthcare & Life Sciences Technology Leader, Partner Ecosystem, Amazon Web Services
Nuo Wang
(Chemistry), 9/10-9/15; subsequently Postdoctoral Fellow, California Institute of Technology; now Scientist, Google
Vincent Metzger
3/11-8/14; currently, postdoctoral fellow, U. New Mexico School of Medicine.
Joe Kaus
(Chemistry), 9/11-5/15; currently, Senior Software Engineer II at Relay Therapeutics in Cambridge MA.
M. Olivia (Kim) Pierce
(Chemistry) 2/12 - 6/15, currently, Principal Scientist, CADD, at Bristol Myers Squibb.
Anna Górska
6/12 - 9/12; subsequently, Ph.D. student, Universität Tübingen, Germany
Alisha Caliman
(Biomedical Sciences), 6/12-6/17, subsequently, Senior Scientist, AstraZeneca.
Julie Grouleff
visitor 9/12-3/13; GS, Aarhus University, Denmark. Postdoc, Aarhus University. Currently, Postdoctoral Fellow, Ontario Institute for Cancer Research, Toronto, Canada.
Ole Andersen
visitor 10/13-3/14; GS, Aarhus University, Denmark. Currently, Senior Bioinformatician, Qiagen.
Christopher Lee
(Chemistry) 6/14 – 3/19. Currently, Hartwell Foundation Postdoctoral Fellow, Rangamani and Holst Labs, UCSD.
Daniel Mermelstein
12/14 -5/18; computational software engineer at Pfizer, La Jolla.
Kimberly, McCabe
(Bioengineering), 5/15 – 6/19; subsequently; Research Scientist at the Simula Research Laboratory in Norway.
Rohith Mohan
Visitor 6/15-8/15, Ph.D. student, University of California, Irvine; currently, Scientific R&D Development Manager, BIOVIA Dassault Systems.
Sara Kochanek
(Chemistry), 7/15-11/19; co-advised with Rommie Amaro. Currently, Investigator II, Novartis Institutes for BioMedical Research.
Alexandra “Sasha” Heyneman
(Chemistry), 9/15-12/17; co-advised with Rommie Amaro. Subsequently, Pharmacy School.
Ben Jagger
Chemistry), 12/15-5/20; co-advised with Rommie Amaro. Principal Scientist, Computation, at Evercrisp Biosciences in Berkeley.
Sara Carmignani
Visitor, 1/16-4/16; Ph.D. student Dept. of Theory, Max-Planck-Institut für Kohlenforschung, Muelhein an der Ruhr, Germany.
Da Shi
(Chemistry), 3/17-8/20; co advised with Ruben Abagyan. Currently, Senior Scientist, Schrodinger, Inc.
Terra Sztain
(Chemistry), 3/17-5/21; co-advised with Michael Burkart. Currently, Assistant Professor of Chemistry and Medicinal Chemistry, University of Michigan, Ann Arbor.
Christian Seitz
4/17-11/22; Ph.D. (Chemistry), 2022; co-advised with Rommie Amaro. Currently, postdoc, University of Chicago & Argonne National Lab.
Abby Teitgen
7/19-present; (Bioengineering), co-mentored with Andrew McCulloch.
Marcus Hock
5/20-present; (Bioengineering), co-mentored with Andrew McCulloch.
Aslihan Iliyaz
Visitor, 10/21-3/22, Ph.D., student, University of Copenhagen, Denmark

Pregraduate and High School Students

Liton Hudson
9/82-5/83.
Zibandeh Bayat
6/83-5/85.
Tony Thang
1/89-8/90.
Raymond Tan
5/90-8/92. Subsequently, M.D. program, Tufts University.
Zachariah Dortch
6/90-7/90.
Henry Chang
7/90-8/91.
David Vaughn
8/90-1/91.
Jim Chuong
1/81-8/91.
Bhavana Desai
4/91-12/91.
Jeremy Martin
6/92-7/92.
John Tydlaska
6/92-7/92.
Jason Tibbits
7/92-9/92.
Irwin Lee
6/93-9/93; subsequently, M.D. program, Harvard University.
Brent Hanks
6/94-9/94; subsequently, M.D. program, Baylor College of Medicine.
Paul Clemons
6/94-5/95; subsequently, PhD in Molecular and Cellular Biology, Harvard, 2001; Chemical Biology Fellow, Broad Institute.
George Nguyen
6/95-8/95.
Jeffrey Tsai
7/95-9/96.
Erik Hom
8/95-9/97; subsequently, Postdoctoral Scholar, MCB, Harvard University.
Lawrence Li
5/96-12/96; subsequently, M.D. program, University of Illinois.
Allan Cruz
1/97-6/99.
Carrie Aroyan
3/98-6/99' subsequently, Ph.D. program, Synthetic Organic Chemistry, Boston College.
Kevin Masukawa
3/98-6/99; subsequently, Ph.D. program, Pharmaceutical Chemistry, UCSF.
Brent Gregersen
3/99-7/00; subsequently, Ph.D. program, Physical Chemistry, University of Minnesota. subsequently with D.E. Shaw Research and Development.
Helene Jensen
4/99-3/00; subsequently, M.S. program, Forensic Chemistry, University of New Haven.
Laura Neurauter
6/99-3/00.
Barry Smith
7/99-9/00; subsequently Adjunct Assistant Professor of Mathematics, University of California, Irvine.
Gregory Sims
12/99-6/01.
Greg Gidofalvi
6/00-9/00; subsequently, Ph.D. program, Chemical Physics, University of Chicago.
Christine Gould
6/01-9/01; subsequently, Ph.D. program, Biomedical Sciences, UCSD.
Chiansan Ma
6/01-9/01; subsequently, Ph.D. program, Chemical Physics, MIT.
Mike Tolleth
1/02-9/03.
Peter Sims
1/02-6/04 – Winner, J.E. Mayer Award for Undergraduate Research, UCSD – Currently, Associate Professor of Biochemistry and Molecular Biophysics, and of Systems Biology, Columbia University.
Toni Smith
3/02-8/03; subsequently, Ph.D. program, Chemistry, Iowa State University.
Michael Lim
6/02-8/02.
Angelique Eslami
6/02-8/02; subsequently, Ph.D. program, Biosciences, University of Iowa.
Maurice Zissen
6/02-8/02; subsequently, M.D. program, Stanford University.
Hovig Bayandorian
11-02-6/05; subsequently, Ph.D. program, Physics, UC Berkeley.
Tony Raubitschek
2/03-9/04.
Yonghui Yu
2/04-9/04.
Jennifer Greene
5/04-7/04. HHMI EXROP Scholar; subsequently, Ph.D. program, Biochemistry and Molecular Biophysics, University of Pennsylvania.
Peter Ung
6/04-6/06 – Winner of J.E. Mayer Award for Undergraduate Research, UCSD – subsequently, Senior Research Scientist, Icahn School of Medicine at Mount Sinai.
Irina Olshanskaya
9/04-12/04.
Erik Corona
1/05-6/05.
Shayri Greenwood
5/05-7/05; subsequently, HHMI EXROP Scholar; subsequently, pre Ph.D. Program, SUNY Stony Brook.
Maurice Zissen
8/05-4/06; subsequently, M.D. program, Stanford.
Matthew Chang
9/05-6/06.
Matthew Gonzales
11/05-5/06; subsequently, M.D./Ph.D program, UCSD.
Erik Johan Qvist
3/06-7/06; subsequently, Ph.D. program, Chemistry, Lund University Sweden.
Lily Cheng
10/16-7/08; Subsequently MD program UC Davis. Currently, General Surgery Resident, UCSF.
Conor Riley
9/06-1/08; subsequently, Research Associate, Wildcat Discovery Technologies.
Adnan Akil
9/07-1/08.
Alexandra Goetz
9/07-1/08.
Xuanyao Liu
2/08-6/08 (exchange student, National Univ. Singapore). Working with Barry Grant.
Jeffry Yin
1/08-3/08 (academic internship program course; paper on drug design; 4 units credit).
Nicolas Sawaya
4/08; subsequently, graduate student, Harvard University.
Jeffrey Sung
4/08-6/10; currently, Software Engineer, ComponentWise Solutions, Inc., Washington, DC
Meghan Cain
6/08-8/08; subsequently, undergraduate student, Rensselaer Polytechnic Institute, starting 9/09.
Michelle Zhou
9/08-6/12; subsequently, Medical Student UC Irvine.
Daniel Dadon
1/09-7/10. subsequently, Director of Scientific Strategy Business Development, Elektrofi, Inc.
Homero Vazquez
6/09-9/10, HHMI EXROP Scholar.
Ben Wilson
6/09-8/09, HHMI EXROP Scholar.
Sam Cho
6/09-8/09, visitor, Hamilton College.
Nuo Wang
8/09-1/10; exchange student from Hong Kong University. Subsequently, PhD, UCSD; Postdoctoral Fellow, California Institute of Technology; now Scientist, Google
Victoria Fashakin
6/10-8/10; HHMI EXROP Scholar; currently M.D. student, Columbia University.
Kalli Kappel
9/10-8/14; subsequently, PhD, Stanford University and postdoc, MIT.
Zara Perumal
5/12-8/12; subsequently B.S., M.S., computer science at MIT. Currently, Software Engineer, Google, Cambridge, MA.
Carlos Hernández
6/12-8/12, HHMI EXROP Scholar. Subsequently, Stanford University.
Rigney Turnham
7/12-8/12, SURF summer student. Subsequently, University of Washington Seattle.
Jason Dizon
9/12-4/13.
Kimberley Insigne
10/12-6/13; subsequently, Ph.D. UCLA, currently, Computational Biologist, Dyno Therapeutics.
Aishwarya Venkatramani
9/15 – 6/18; currently, Ph.D. student at Cambridge University.
Hyun (Christy) Lee
1/16 - 6/16.
Rachael Kretsch
5/16-7/16, 5/16-7/16; currently, Ph.D. program in Biophysics at Stanford.
Yibei Jiang
6/17 – 6/18; currently, scientist at the biotech startup Junodox.
Ramces Gonzales
6/17 - 8/17, visitor, UC Merced, Stars Program; currently, PhD program in Electrical and Computer Engineering at UC Davis.
Guan-yi (Kyle) Li
5/18 – 8/21.
Jianing (Bruce) Wang
7/18 – 9/19; subsequently, Ph.D. student, Biological Sciences, UCSD.
Andy Mitchell
7/19 – 6/21. Currently, Ph.D. program in chemistry, Stanford.
Shengjun You
11/19 – 6/21. Currently, graduate program in biostatistics program, Johns Hopkins.
Kyra Wu
1/20 – 6/21, Canyon Crest High School. Currently, starting undergraduate work at UCSD.
Website Security Test