Gallery of Biomolecule Simulations


structural fluctuations
Structural fluctuations observed through molecular dynamic simulations
HIV protease with inhibitor
HIV protease with inhibitor
Brownian dynamics
Brownian dynamics simulation of enzyme-substrate encounter
Electrostatic potential
Electrostatic potential contours of mouse acetylcholinesterase
protein-protein association
Electrostatically accelerated protein-protein association
Brownian dynamics
Brownian dynamics simulation of substrate diffusion between enzyme active sites
active site gorge
Active site gorge in acetylcholinesterase
reaction gorge fluctuation
Reaction gorge fluctuation in acetylcholinesterase (animation)

(animation as a Java applet)
electrostatic potential fluctuation
Electrostatic potential fluctuation around acetylcholinesterase dimer (animation, requires Java)
Brownian dynamics simulation (animation)
Brownian dynamics simulation (animation)
AChE/TMA MD simulation (animation)
AChE/TMA MD simulation (animation)

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