Kinesin's structural core. Positions highlighted by core.find() shown in yellow.
A difference distance matrix of two conformers
Investigating sequence-structure relationships with bio3d
entropy.tiff
Comparing MD trajectories and all available X-ray structures
Running a bio3d example
All kinesin X-ray structures aligned and core fitted with bio3d
Back view: principal component analysis (PCA) of all kinesin X-ray structures.
Front view: principal component analysis (PCA) of all kinesin X-ray structures.
All myosin X-ray structures aligned and core fitted with bio3d
Myosin motor domain structural ensemble for PCA
pca_md_cluster_hist.tiff
Visualizing the similarity of structures within an alignment
pca_md_xray.tiff
Clustering of structural data in PC space
sse_packing.jpg
MD_trj_dif.tiff
MD_conformer_clustering.tiff
rmsfMD_xrayDISP.jpg
Residue loadings for a given PC
residue_displacment.jpg