Overview
Bio3D is an R package containing utilities for the analysis of protein structure, sequence and trajectory data.
It is currently distributed as platform independent source code under the GPL version 2 license. Please see the Download page for installation instructions.
Features
The ability to read and write structure, sequence and dynamics trajectory data. >>more
Perform atom summaries, atom selection, re-orientation, superposition, rigid core identification, clustering, torsion analysis, distance matrix analysis and principal component analysis of structure data. >>more
Perform conservation analysis of sequence and structural data. >>more
In addition, various utility functions are provided to enable the statistical and graphical power of the R environment to work with biological sequence and structural data. >>more
Citation
Bio3D: An R package for the comparative analysis of protein structures.
Grant, Rodrigues, ElSawy, McCammon, Caves, (2006) Bioinformatics 22, 2695-2696
( Abstract | PubMed | PDF )