Gorfe AA and Caflisch A.
Ser170 controls the conformational multiplicity of the 166-175 loop in prion proteins: Implication for conversion and species barrier
The FASEB Journal,  (online version,   2007) [pdf][supplementary data]

Gorfe AA and Caflisch A.
Functional plasticity in the substrate binding site of beta-secretase (BACE).
Structure,   13:1487-1498   (2005).[pdf]

Gorfe AA, Pellarin R and Caflisch A.
Membrane localization and flexibility of a lipidated ras peptide studied by molecular dynamics simulations.
J. Am. Chem. Soc.,   126(46):15277-15286   (2004).[pdf]

Gorfe AA, Caflisch A, Jelesarov I.
The role of flexibility and hydration on the sequence-specific DNA recognition by the Tn916 integrase protein: a molecular dynamics analysis.
J Mol Recognit.,  17(2): 120-31  (2004).[pdf]

Gorfe AA, Jelesarov I.
Energetics of sequence-specific protein-DNA association: computational analysis of integrase Tn916 binding to its target DNA.
Biochemistry,  42(40):11568-76  (2003).[pdf]

Gorfe AA, Ferrara P, Caflisch A, Marti DN, Bosshard HR, Jelesarov I.
Calculation of protein ionization equilibria with conformational sampling: pK(a) of a model leucine zipper, GCN4 and barnase.
Proteins,  46(1):41-60  (2002).[pdf]

Gorfe AA, Brandsdal BO, Leiros HK, Helland R, Smalas AO.
Electrostatics of mesophilic and psychrophilic trypsin isoenzymes: qualitative evaluation of electrostatic differences at the substrate binding site.
Proteins,  40(2):207-17  (2000).[pdf]

Last modified on 06/02/2006