iAPBS Interface: Users's Guide

Robert Konecny

University of California San Diego
National Biomedical Computation Resource
Center for Theoretical Biological Physics

     
    

Copyright © 2005-2009 UC Regents

The current release of the iAPBS module is 1.2.0. (PDF version)
Table of Contents
1. Introduction
1.1. iAPBS interface
1.2. Amber/iAPBS Module
1.3. NAMD/iAPBS Module
1.4. CHARMM/iAPBS Module
2. Implementation of the iAPBS interface
3. Installing the iAPBS Interface
3.1. Requirements
3.2. Building iAPBS interface
3.3. Building of Amber/APBS module
3.4. Building of NAMD/APBS module
3.5. Building of CHARMM/APBS module
4. Using the iAPBS Interface
4.1. Using Amber/APBS module
4.2. Using NAMD/APBS module
4.3. Using CHARMM/APBS module
4.4. Notes
5. Examples
5.1. Examples of using the Amber/APBS module
5.2. Examples of using the NAMD/APBS module
5.3. Examples of using the CHARMM/APBS module
List of Tables
4-1. APBS and Amber/APBS keywords
4-2. APBS and NAMD/APBS keywords
4-3. APBS and CHARMM/APBS keywords
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  Introduction