iAPBS Interface: Users's Guide
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Chapter 5. Examples

Table of Contents
5.1. Examples of using the Amber/APBS module
5.1.1. Solvation energy calculation
5.1.2. Electrostatic energy calculation
5.1.3. Molecular dynamics in implicit solvent using APBS
5.1.4. Calculation and visualization of electrostatic potential
5.1.5. Notes
5.2. Examples of using the NAMD/APBS module
5.2.1. Solvation energy calculation
5.2.2. Molecular dynamics in implicit solvent using APBS
5.2.3. Calculation and visualization of electrostatic potential
5.3. Examples of using the CHARMM/APBS module
5.3.1. Solvation energy calculation
5.3.2. Molecular dynamics in implicit solvent using APBS
5.3.3. Calculation and visualization of electrostatic potential
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Notes Examples of using the Amber/APBS module